Systems Biology and Regulatory Genomics Joint Annual RECOMB 2005 Satellite Workshops on Systems Biology and on Regulatory Genomics, San Diego, CA, USA; December 2-4, 2005, Revised Selected Papers /

Corporate Author: SpringerLink (Online service)
Other Authors: Eskin, Eleazar., Ideker, Trey., Raphael, Ben., Workman, Christopher.
Format: Electronic
Language: English
Published: Berlin, Heidelberg : Springer Berlin Heidelberg, 2006.
Series: Lecture Notes in Computer Science, 4023
Subjects:
Online Access: http://dx.doi.org/10.1007/978-3-540-48540-7
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Table of Contents:
  • An Interactive Map of Regulatory Networks of Pseudomonas aeruginosa Genome
  • The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways
  • Decomposition of Overlapping Protein Complexes: A Graph Theoretical Method for Analyzing Static and Dynamic Protein Associations
  • Comparison of Protein-Protein Interaction Confidence Assignment Schemes
  • Characterization of the Effects of TF Binding Site Variations on Gene Expression Towards Predicting the Functional Outcomes of Regulatory SNPs
  • Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes
  • Improvement of Computing Times in Boolean Networks Using Chi-square Tests
  • Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements
  • Causal Inference of Regulator-Target Pairs by Gene Mapping of Expression Phenotypes
  • Examination of the tRNA Adaptation Index as a Predictor of Protein Expression Levels
  • Improved Duplication Models for Proteome Network Evolution
  • Application of Expectation Maximization Clustering to Transcription Factor Binding Positions for cDNA Microarray Analysis
  • Combinatorial Genetic Regulatory Network Analysis Tools for High Throughput Transcriptomic Data
  • Topological Robustness of the Protein-Protein Interaction Networks
  • A Bayesian Approach for Integrating Transcription Regulation and Gene Expression: Application to Saccharomyces Cerevisiae Cell Cycle Data
  • Probabilistic in Silico Prediction of Protein-Peptide Interactions
  • Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences
  • Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties
  • An Interaction-Dependent Model for Transcription Factor Binding
  • Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans, H. sapiens and A. thaliana
  • A Comprehensive Kinetic Model of the Exocytotic Process: Evaluation of the Reaction Mechanism.